The atlas viewer requries Java 5 or above. The resulting maps of t statistics were examined to localize relevant regions anatomically in reference to a macaque brain atlas. Ventral Surface View. The white matter tracts were traced with DTI-based tractography. This tutorial shows how mapping to a standard atlas adds value to image data. The Barbary macaque (Macaca sylvanus), also known as Barbary ape or magot, is a macaque species native to the Atlas Mountains of Algeria and Morocco along with a small population of uncertain origin in Gibraltar. Population-averaged macaque brain atlas with high-resolution ex vivo DTI integrated into in vivo space. UNC Atlases for Macaque Brain Image Analysis. Kusama T., Mabuchi M. Stereotaxic Atlas of the Brain of Macaca fuscata. A publication in Neuroinformatics followed in 2015. For the generation of the initial brain mask (for the purpose of skull stripping), we employed the UNC-Wisconsin juvenile macaque atlas via ABC (Prastawa et al., 2005). This atlas is not based on a single subject but instead is an average constructed from the averaged position, orientation and scale from all the individual subjects and is representative of both the intensities and spatial positioning of anatomical structures. Here we present a brain template for the Japanese macaque (Macaca fuscata). NIH Blueprint Non-Human Primate (NHP) Atlas. Construction of spatiotemporal infant cortical surface atlas of rhesus macaque Abstract: As a widely used animal model in MR imaging studies, rhesus macaque helps to better understand both normal and abnormal neural development in the human brain. imaging to establish a stereotaxic brain atlas of the macaque brain. It may take 30 seconds to load the Atlas the first time. The NIH Blueprint NHP atlas is an online database of gene expression in the rhesus macaque brain from 6 prenatal stages and four postnatal stages including birth to four years old. The atlas is publicly accessible and allows users to search for gene expression … The NeuroMaps 123 segmentation was later refined on the INIA19 adult population in vivo symmetric template 124 (Rohlfing et al., 2012). Skull and brain, as illustrated in Gervais ' Histoire naturelle des mammifères Macaque brain atlases generated at UNC-Chapel Hill. The Allen Human Brain Atlas is a unique multimodal atlas of the human brain, integrating anatomic and genomic information. 1st Edition by J. Wu (Author), M.F. A number of modern digital anatomy techniques, based on structural MR brain images, have recently become applicable to the non-human primate brain. INIA19 primate brain atlas A detailed atlas informed from over 100 structural MR scans of 19 rhesus macaque animals. Dorsal Surface View. It was first presented as a poster and demo session at the INCF booth of SFN 2009 in Chicago. Single-subject macaque brain DTI template was obtained by transforming the postmortem high-resolution DTI data into in vivo space. The rhesus macaque average atlas is comprised of 7 T1-weighted MRIs of normal young adult rhesus macaque brains. Visit Website. Tokyo: University of Tokyo Press, 1970. We present a large-population MRI atlas of the cynomolgus macaque brain, derived from 162 high-resolution, T1-weighted structural scans of cynomolgus monkeys ranging from 2 to 9 years old. A comprehensive transcriptomic and open chromatin atlas of the rhesus macaque brain is key to a deeper understanding of the brain. Baltimore: University Park Press, 1970. Lateral Surface View. By averaging the voxel intensities of the 7 rhesus MRI which … With the DTI resolution about 300µm and T 2-weighted image resolution about 200µm, many gray and white matter structures can be identified. Bowden (Editor), R.F. It is one of the best-known Old World monkey species. Martin R.F., Bowden D.M. Here we characterize the transcriptome of 416 brain samples from 52 regions of 8 rhesus macaque brains. Primate Brain Maps: Structure of the Macaque Brain: A Laboratory Guide with Original Brain Sections, Printed Atlas and Electronic Templates for Data and Schematics (including CD-ROM). We identify gene modules associated with specific brain regions like the cerebral cortex, pituitary, and thalamus. Martin (Editor) & … In Japanese. All these initial, automatically generated brain masks were manually corrected by human expert raters via InsightSNAP (Yushkevich et al… Available atlases: - DTIAtlas_6_12months: DTI atlas with white matter fiber tracts (6-12 months old). It uses exploratory work of Gleb Bezgin, creator of the CoCoMac-Paxinos3D tool. - Tissue_multiAtlas: Multi-atlas for tissue segmentation in macaques, includes left-right mirrored images for symmetric analysis (6-12 months old). However, a script to warp between the INIA19 and MNI space is supplied with the Lead-DBS macaque … Lab member, Minhui Ouyang, won magna cum laude award at … Statistical Analysis. Ex vivo DTI of ten macaque brains was then averaged in the in vivo single-subject template space to generate population-averaged macaque brain DTI atlas. Tools and Methods section expanded to include Nomenclature for the rat brain from the Swanson-2004 atlas. The Scalable Brain Atlas is developed by Rembrandt Bakker in collaboration with many others. to brain atlases for presentation and publication. Works well with AutoTract. Here we present a brain atlas collection for the adult rhesus macaque (M. mulatta) and review methods for creating multi-modal atlases using an infrastructure that will allow voxel- and surface-based approaches that are common in human brain mapping studies to be readily applied to non-human primate studies. The NIH Blueprint Non-Human Primate (NHP) Atlas consists of a suite of gene expression data, neuroanatomical data and informatics tools for exploring the cellular and molecular architecture of the developing rhesus macaque brain. Completed definitions, photomicrographs and mapping to the Macaque Brain Atlas of cortical areas by Brodmann-1909 (30 areas), Mauss-1908 (31), Vogts-1919 (29), Walker-1940 (13), Bonin-1947 (35). Image data are mapped to a stereotaxic MRI atlas of the macaque brain or the mouse brain. A template atlas based on coronal, sagittal and horizontal brain sections, Brain Structure and Function, 10.1007/s00429-011-0370-5, 217, 2, (613-666), (2011). The 121 NeuroMaps macaque atlas covers the whole brain and is presented on an ex vivojuvenile 122 rhesus macaque brain (Bakker, Tiesinga & Kötter, 2015; Rohlfing et al., 2012). Robertson (Author), D.M. Abstract To aid in the analysis of rhesus macaque brain images, we aligned digitized anatomical regions from the widely used atlas of Paxinos et al. Stereotaxic Atlas of the Brain of Macaca fuscata. José L. Lanciego, Alfonso Vázquez, The basal ganglia and thalamus of the long-tailed macaque in stereotaxic coordinates. The rhesus atlas was created via the macaque atlas (see Macaquefor details). CTb (area 7 injection) (Cholera Toxin, subunit b) coronal, immuno, whole-brain 267 slides, 0.46 um/pixel Dataset Id: 124 to a published magnetic resonance imaging (MRI) template based on a large number of subjects. Medial Surface View. A stereotaxic template atlas of the macaque brain for digital imaging and quantitative neuroanatomy. Digitally labelled atlas images were aligned to the template in 2D and then in 3D. Such voxel-based quantitative techniques require a species-specific standardized brain template. The high resolution macaque brain DTI atlas (0.4x0.4x0.4mm), completed by Dr Lei Feng et al, has been released to public in the website (www.brainmrimap.org) hosted by the lab, August, 2017. View the Template Atlas macaque brain (Macaca fascicularis) Select a View: Coronal Sections. With the addition of this atlas collection, there are now three Macaca species that have population- average MRI-based atlases: N2K atlas for Macaca nemestrina (Black et al., 2001a, 2004), F6 atlas for Macaca fascicularis (Vincent et al., 2007), and the SL atlas collection, reported here, for Macaca mulatta. The macaque average atlas is comprised of 25 T1-weighted MRIs of normal young adult macaque brains (18 Macaca fascicularis, 7 Macaca mulatta). Dubach (Author), J.E. It illustrates mapping an area to the macaque atlas but is equally applicable to the mouse atlas. Unpaired t tests were used to assess differences in network activity between animal groups. 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